JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD177_chr19_43348686_43368172	1/0	c0042	1314	1	0	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0043	1314	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	c0044	1314	1	0	0	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD180_chr5_67174613_67201799	0/1	c0001	1986	223	50	40	88	11	33	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0002	1986	66	7	11	45	0	3	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0003	1986	37	27	3	5	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0004	1986	28	1	6	21	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	1/0	c0005	1986	16	1	0	14	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0006	1986	10	0	8	0	1	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0007	1986	8	5	1	0	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0008	1986	4	4	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0009	1986	4	0	0	4	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0010	1986	2	2	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0011	1986	2	0	0	2	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0012	1986	2	0	0	0	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0013	1986	2	0	2	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0014	1986	1	1	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0015	1986	1	0	1	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0016	1986	1	0	0	0	0	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	c0017	1986	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD19_chr16_28926971_28944342	0/0	c0001	1671	242	77	18	116	3	28	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0002	1671	85	8	17	48	5	7	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	1/1	c0003	1671	56	2	25	18	3	6	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0004	1671	6	0	4	0	1	1	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0005	1671	6	0	0	6	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0006	1671	2	2	0	0	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0007	1671	1	0	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0008	1671	1	0	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	c0009	1671	1	1	0	0	0	0	copy fasta	CD19	chr16	28926971	28944342
CD1A_chr1_158249424_158263269	1/1	c0001	984	343	84	60	152	10	35	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0002	984	81	4	5	64	1	7	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0003	984	7	1	5	0	0	1	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0004	984	6	0	3	0	3	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0005	984	4	4	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0006	984	2	0	0	0	0	2	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0007	984	1	0	0	0	0	1	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0008	984	1	0	1	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	c0009	984	1	1	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1B_chr1_158322955_158336531	1/1	c0001	1002	414	78	71	211	10	42	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0002	1002	18	16	0	0	0	2	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0003	1002	2	0	2	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0004	1002	2	2	0	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0005	1002	2	0	1	0	1	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0006	1002	1	1	0	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0007	1002	1	0	0	1	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0008	1002	1	1	0	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	c0009	1002	1	0	0	0	1	0	copy fasta	CD1B	chr1	158322955	158336531
CD1C_chr1_158284923_158299774	1/1	c0001	1002	388	57	69	202	13	45	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0002	1002	21	18	1	0	0	2	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0003	1002	17	12	2	0	3	0	copy fasta	CD1C	chr1	158284923	158299774