JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD1C_chr1_158284923_158299774	0/0	c0004	1002	12	0	0	12	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0005	1002	4	4	0	0	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0006	1002	1	0	0	0	0	1	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0007	1002	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1D_chr1_158175895_158191427	1/1	c0001	1008	426	89	69	210	14	42	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0002	1008	2	0	0	0	0	2	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0003	1008	1	0	1	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0004	1008	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0006	998	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0007	1008	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	c0008	1008	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1E_chr1_158348894_158362553	0/0	c0001	1167	249	60	33	125	7	24	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	1/1	c0002	1167	147	7	33	84	7	14	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0003	1167	10	10	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0004	1167	7	7	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0005	1167	6	0	3	0	0	3	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0006	1167	5	5	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0007	1167	3	0	1	0	0	2	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0008	1167	2	0	0	0	0	2	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0009	1167	1	0	0	0	0	1	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0010	1167	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0012	1167	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0013	1167	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0014	1167	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	c0015	1167	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD200R1L_chr3_112810711_112851864	1/0	c0001	753	137	14	11	104	2	5	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0002	753	111	8	27	54	6	16	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0003	753	96	51	15	18	1	11	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/1	c0004	752	48	13	14	8	5	7	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0005	753	11	7	1	0	0	3	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0006	752	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0007	753	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0008	753	1	1	0	0	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0009	753	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	c0010	753	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1_chr3_112916205_112980103	0/0	c0001	1047	229	66	45	91	7	20	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	1/1	c0002	1047	132	28	28	56	4	14	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0003	1047	38	0	1	36	0	1	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0004	1047	6	0	0	6	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0005	1047	4	0	0	4	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0006	1047	3	0	0	0	0	3	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0007	1047	1	0	0	0	1	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0009	1047	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	c0010	1047	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200_chr3_112328156_112367812	0/1	c0001	810	182	48	39	73	11	10	copy fasta	CD200	chr3	112328156	112367812