JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD200_chr3_112328156_112367812	0/0	c0002	810	88	28	6	42	0	12	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0003	810	73	10	19	31	4	9	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	1/0	c0004	810	51	3	12	27	1	7	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0005	810	6	6	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0006	810	4	0	0	2	0	2	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0007	810	2	0	2	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0008	810	1	1	0	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	c0009	810	1	0	0	1	0	0	copy fasta	CD200	chr3	112328156	112367812
CD207_chr2_70825211_70840816	0/1	c0001	987	128	11	21	78	5	12	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	1/0	c0002	987	54	14	6	31	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0003	987	50	1	6	41	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0004	987	37	18	5	11	1	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0005	987	30	4	8	10	1	7	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0006	987	23	0	0	20	0	3	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0007	987	19	2	11	1	2	3	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0008	987	14	13	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0009	987	13	0	5	4	2	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0010	987	10	8	2	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0011	987	7	2	0	1	1	3	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0012	987	7	0	4	3	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0013	987	6	6	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0014	987	6	6	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0015	987	4	0	3	0	1	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0016	985	4	0	0	4	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0017	987	4	0	0	4	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0018	987	3	1	0	0	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0019	987	3	0	0	3	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0020	987	2	0	0	0	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0021	985	2	0	0	2	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0022	987	2	0	1	0	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0023	987	2	0	2	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0024	987	1	0	0	0	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0025	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0026	987	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0027	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0028	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0029	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0030	987	1	0	0	0	1	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0031	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0032	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0033	987	1	0	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0034	987	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0035	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0036	985	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	c0037	987	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD209_chr19_7734993_7752534	1/1	c0001	1215	412	70	75	204	16	45	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0002	1215	9	8	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0003	1215	8	7	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0004	1215	3	3	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0005	1146	3	2	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534