JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD209_chr19_7734993_7752534	0/0	c0006	1215	2	0	0	2	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0007	1215	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0008	1215	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0009	1008	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0011	1215	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0012	1215	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0013	1215	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0014	1215	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0015	1215	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0016	1215	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0017	1215	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0018	1215	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0019	1215	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0020	1284	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0021	1353	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0022	1215	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	c0023	1215	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD226_chr18_69848274_69952873	1/0	c0001	1011	134	55	24	34	3	17	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/1	c0002	1011	103	24	33	29	1	15	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0003	1011	12	4	4	2	0	2	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0004	1011	2	1	1	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0005	1011	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0007	1011	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0008	1011	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	c0009	1011	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD22_chr19_35324187_35352361	1/1	c0001	2544	289	59	64	120	14	30	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0002	2544	64	7	10	44	0	3	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0003	2544	33	1	1	26	1	4	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0004	2544	20	17	3	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0005	2544	8	0	0	4	0	4	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0006	2544	6	5	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0007	2544	5	3	2	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0008	2544	4	0	0	1	1	2	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0009	2544	4	0	0	4	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0010	2544	3	0	0	3	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0011	2544	3	3	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0012	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0013	2544	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0014	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0015	2544	1	0	0	0	0	1	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0016	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0017	2544	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0018	2544	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0019	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0020	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0021	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0022	2544	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0023	2544	1	0	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361