JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD22_chr19_35324187_35352361	0/0	c0024	2544	1	0	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0025	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0026	2544	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0027	2544	1	0	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0028	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0029	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	c0030	2544	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD244_chr1_160825160_160867887	1/0	c0001	1098	352	69	51	178	16	37	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0002	1098	14	12	0	0	0	2	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0003	1098	10	0	0	9	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0004	1098	7	7	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0005	1098	4	0	0	4	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0006	1098	3	0	3	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0007	1098	2	1	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0008	1098	2	2	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0009	1098	2	2	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/1	c0010	1098	1	0	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0011	1098	1	0	0	1	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0012	1098	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0013	1098	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0014	1098	1	0	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0015	1098	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0016	1098	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	c0017	1098	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD247_chr1_167425640_167523529	1/1	c0001	495	333	66	66	149	15	35	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0002	495	24	19	4	0	1	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0003	495	8	8	0	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0004	495	2	0	0	2	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0005	495	2	0	2	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0006	495	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0007	495	1	1	0	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0008	495	1	0	0	0	0	1	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0009	495	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	c0010	495	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD248_chr11_66309494_66322044	1/0	c0001	2274	260	52	33	139	6	29	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/1	c0002	2274	81	3	29	31	9	8	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0003	2274	12	6	4	0	1	1	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0004	2271	8	0	0	8	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0005	2274	5	5	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0006	2274	5	0	2	3	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0007	2274	4	4	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0008	2274	3	0	0	3	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0009	2274	2	0	0	2	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0010	2274	2	2	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0011	2274	2	2	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0012	2274	2	2	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0013	2274	2	2	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0014	2274	2	0	0	2	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0015	2274	2	2	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0016	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044