JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD248_chr11_66309494_66322044	0/0	c0017	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0018	2274	1	0	0	1	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0019	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0020	2274	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0021	2274	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0022	2274	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0023	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0024	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0025	2274	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0026	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0027	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0028	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0029	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0030	2274	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0031	2274	1	0	0	1	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0032	2274	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0033	2274	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0034	2274	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	c0035	2274	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD24_chr6_106964831_106979729	1/1	c0001	243	296	58	52	146	10	28	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	c0002	243	164	41	28	77	8	10	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	c0003	243	1	1	0	0	0	0	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	c0004	243	1	0	0	1	0	0	copy fasta	CD24	chr6	106964831	106979729
CD274_chr9_5445542_5475554	1/1	c0001	873	419	82	77	190	18	50	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	c0002	873	3	3	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	c0003	873	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	c0004	873	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	c0005	873	1	0	1	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	c0006	873	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD276_chr15_73679383_73719514	1/1	c0001	1605	275	43	60	123	11	36	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0002	1605	29	24	5	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0003	1605	23	12	4	4	1	2	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0004	1605	22	4	1	15	0	2	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0005	1605	13	0	0	13	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0006	1605	3	0	2	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0007	1605	3	0	1	2	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0008	1605	2	2	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0009	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0010	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0011	1605	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0012	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0013	1605	1	0	1	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0014	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0015	1605	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0016	1605	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0017	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0018	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0019	1605	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0020	1605	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	c0021	1605	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514