JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD276_chr15_73679383_73719514	0/0	c0022	1605	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD27_chr12_6439955_6456713	0/1	c0001	783	418	79	79	216	13	30	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	c0002	783	47	13	7	7	5	15	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	c0003	783	4	4	0	0	0	0	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	c0004	783	1	0	0	0	0	1	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	1/0	c0005	783	1	0	0	0	0	0	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	c0006	783	1	0	0	1	0	0	copy fasta	CD27	chr12	6439955	6456713
CD28_chr2_203701639_203743912	1/1	c0001	663	383	87	64	174	16	40	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	c0002	663	2	0	2	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	c0003	663	2	0	0	2	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	c0004	663	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	c0005	663	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	c0006	663	1	0	0	1	0	0	copy fasta	CD28	chr2	203701639	203743912
CD2AP_chr6_47472789_47632263	0/1	c0001	1920	304	72	66	122	16	27	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0002	1920	6	5	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	1/0	c0003	1920	4	3	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0004	1920	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0005	1920	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0006	1920	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0007	1920	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0008	1920	1	0	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0009	1920	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	c0010	1920	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2BP2_chr16_30345773_30360308	1/1	c0001	1026	305	59	71	128	11	34	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0002	1026	38	32	3	0	0	3	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0003	1026	2	0	0	0	0	2	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0004	1026	2	0	1	1	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0005	1026	1	1	0	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0006	1026	1	0	0	1	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0007	1026	1	0	1	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0008	1026	1	0	0	0	0	1	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	c0009	1026	1	0	0	0	1	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2_chr1_116749430_116774229	1/1	c0001	1056	292	29	51	151	14	45	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	c0002	1056	156	58	19	75	2	2	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	c0003	1056	7	7	0	0	0	0	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	c0004	1056	1	0	0	0	0	1	copy fasta	CD2	chr1	116749430	116774229
CD300A_chr17_74461634_74489794	0/1	c0001	900	185	23	39	98	6	18	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	1/0	c0002	900	126	3	20	73	8	21	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0003	900	107	42	20	33	4	8	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0004	900	2	0	0	2	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0005	900	1	0	0	1	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0006	900	1	0	0	0	0	1	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0007	900	1	0	1	0	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	c0008	900	1	0	0	1	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300C_chr17_74536073_74551115	1/1	c0001	675	349	60	70	164	14	39	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0002	675	23	19	2	0	0	2	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0003	675	12	3	2	3	3	1	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0004	675	5	5	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0005	675	4	3	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0006	675	3	0	0	2	1	0	copy fasta	CD300C	chr17	74536073	74551115