Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSM2A_chr16_20446521_20492669	0/0	c0018	1734	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0019	1734	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0020	1734	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0021	1734	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0022	1734	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0023	1734	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0024	1734	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0025	1734	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0026	1734	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0027	1734	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0028	1734	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0029	1734	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	c0030	1734	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2B_chr16_20531226_20581367	0/0	c0001	1734	99	0	10	80	4	5	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/1	c0002	1734	97	19	40	10	7	20	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0003	1734	37	13	3	19	0	2	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0004	1734	35	0	7	26	0	2	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0005	1734	19	17	2	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0006	1734	13	1	1	8	1	2	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0007	1734	11	9	1	0	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0008	1734	9	8	0	0	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0009	1734	9	0	0	7	0	2	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0010	1734	8	8	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	1/0	c0011	1734	7	3	2	0	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0012	1734	5	4	1	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0013	1734	4	4	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0014	1734	4	0	0	4	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0015	1734	3	0	0	0	0	3	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0016	1734	3	2	0	0	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0017	1734	3	0	0	0	0	3	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0018	1734	3	1	0	1	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0019	1734	3	0	0	3	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0020	1734	2	2	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0021	1734	2	0	0	1	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0022	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0023	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0024	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0025	1734	1	0	0	0	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0026	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0027	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0028	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0029	1734	1	0	1	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0030	1734	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0031	1734	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0032	1734	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	c0033	1734	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM3_chr16_20759014_20802581	1/1	c0001	1761	271	58	51	112	12	36	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0002	1761	40	1	3	32	0	4	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0003	1761	13	13	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0004	1761	10	10	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581