JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD300C_chr17_74536073_74551115	0/0	c0007	675	2	1	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0008	675	2	1	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0009	675	2	2	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0010	675	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0011	675	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0012	675	1	0	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0013	675	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0014	675	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	c0015	675	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300E_chr17_74604885_74628738	1/0	c0001	618	196	22	33	126	3	11	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0002	618	136	31	20	65	6	14	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/1	c0003	618	49	8	18	11	2	9	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0004	618	35	18	2	9	2	4	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0005	618	16	4	4	1	5	2	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0006	618	5	4	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0007	618	3	3	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0008	618	2	1	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0009	618	2	0	0	2	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0010	618	1	0	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0011	618	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0012	618	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0013	618	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0014	618	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	c0015	618	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300LB_chr17_74516174_74536475	1/1	c0001	606	298	80	50	128	10	28	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0002	606	101	5	23	50	8	15	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0003	606	3	0	1	0	0	2	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0004	606	1	0	0	0	0	1	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0005	606	1	1	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0006	606	1	0	0	1	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	c0007	606	1	0	0	1	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LD_chr17_74574365_74597283	1/0	c0001	585	148	15	30	77	9	16	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/1	c0002	585	143	20	32	64	7	19	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0003	585	133	43	14	63	2	11	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0004	585	6	6	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0005	585	5	5	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0006	585	2	0	2	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0007	585	2	0	0	2	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	c0008	585	1	1	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LF_chr17_74689317_74717923	0/1	c0001	873	174	10	31	96	11	25	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	1/0	c0002	873	110	38	15	44	2	10	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0003	873	54	25	18	6	1	4	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0004	873	38	5	4	26	1	2	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0005	873	35	12	4	19	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0006	873	7	0	5	0	1	1	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0007	873	3	2	1	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0008	873	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0009	873	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0010	873	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	c0011	873	1	0	0	1	0	0	copy fasta	CD300LF	chr17	74689317	74717923