JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD300LF_chr17_74689317_74717923	0/0	c0012	873	1	1	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LG_chr17_43842176_43868639	1/1	c0001	999	216	41	53	81	9	30	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0002	999	67	42	17	0	4	4	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0003	999	6	6	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0004	999	4	0	2	0	0	2	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0005	999	2	2	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0006	999	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0007	999	1	0	0	1	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0008	999	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0009	999	1	0	0	0	1	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	c0010	999	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD302_chr2_159763628_159803208	1/1	c0001	699	271	37	53	155	9	15	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	c0002	699	125	37	12	52	5	19	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	c0003	699	15	12	3	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	c0004	699	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	c0005	699	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	c0006	699	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD320_chr19_8297127_8313358	1/1	c0001	849	320	49	66	159	14	30	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0002	849	45	30	5	9	0	1	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0003	849	8	8	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0004	849	7	0	0	0	0	7	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0005	849	3	3	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0006	849	2	0	0	0	2	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0007	849	2	2	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0008	849	2	0	2	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	c0009	849	1	0	1	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD33_chr19_51220080_51245016	1/0	c0001	1095	156	23	17	83	5	27	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0002	1095	66	21	14	15	9	7	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0003	1095	63	4	20	34	1	4	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/1	c0004	1095	21	3	15	0	1	1	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0005	1095	11	11	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0006	1095	8	8	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0007	1076	4	0	0	4	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0008	1095	4	4	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0009	1095	3	0	1	0	0	2	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0010	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0011	1095	2	1	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0012	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0013	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0014	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0015	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0016	1076	2	0	0	2	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0017	1095	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0018	1095	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0019	1095	1	0	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0020	1095	1	0	0	0	0	1	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0021	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0022	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0023	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0024	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016