JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD33_chr19_51220080_51245016	0/0	c0025	1095	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0026	1095	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0027	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0028	1095	1	0	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0029	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0030	1095	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	c0031	1095	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD34_chr1_207875972_207916125	1/1	c0001	1158	393	87	71	178	16	39	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0002	1158	9	0	2	5	0	2	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0003	1158	8	0	0	8	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0004	1158	3	2	0	0	0	1	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0005	1158	3	0	0	3	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0006	1158	2	1	1	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0007	1158	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD34_chr1_207875972_207916125	0/0	c0008	1158	1	1	0	0	0	0	copy fasta	CD34	chr1	207875972	207916125
CD36_chr7_80633642_80684274	1/1	c0001	1419	361	79	64	167	13	36	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0002	1419	11	11	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0003	1419	4	0	0	4	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0004	1419	3	0	2	0	1	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0005	1416	3	1	1	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0006	1407	2	0	0	2	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0007	1405	2	0	0	2	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0008	1419	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0009	1419	1	0	0	0	0	1	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0010	1419	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0011	1419	1	0	1	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0012	1419	1	0	0	1	0	0	copy fasta	CD36	chr7	80633642	80684274
CD36_chr7_80633642_80684274	0/0	c0013	1419	1	1	0	0	0	0	copy fasta	CD36	chr7	80633642	80684274
CD37_chr19_49330406_49345606	0/1	c0001	846	315	86	58	133	5	32	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	1/0	c0002	846	48	3	10	24	3	7	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0003	846	13	0	0	13	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0004	846	1	0	0	1	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0005	846	1	0	0	1	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0006	846	1	0	0	0	0	1	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0007	846	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0008	846	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD37_chr19_49330406_49345606	0/0	c0009	846	1	1	0	0	0	0	copy fasta	CD37	chr19	49330406	49345606
CD38_chr4_15773328_15858232	1/1	c0001	903	298	70	61	121	12	32	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	c0002	903	39	6	4	25	0	4	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	c0003	903	3	0	0	3	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	c0004	903	2	0	0	2	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	c0005	903	1	0	1	0	0	0	copy fasta	CD38	chr4	15773328	15858232
CD38_chr4_15773328_15858232	0/0	c0006	903	1	0	0	1	0	0	copy fasta	CD38	chr4	15773328	15858232
CD3D_chr11_118334075_118347705	1/1	c0001	516	432	88	78	198	16	50	copy fasta	CD3D	chr11	118334075	118347705
CD3E_chr11_118299730_118321173	1/0	c0001	624	311	91	43	137	11	28	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/1	c0002	624	87	1	30	40	3	12	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0003	624	6	0	0	6	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0004	624	4	0	0	4	0	0	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0005	624	2	0	0	0	0	2	copy fasta	CD3E	chr11	118299730	118321173
CD3E_chr11_118299730_118321173	0/0	c0006	624	2	1	1	0	0	0	copy fasta	CD3E	chr11	118299730	118321173