JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD46_chr1_207747054_207800504	0/0	c0006	1134	1	0	0	0	1	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0007	1134	1	0	1	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0008	1134	1	0	1	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0009	1134	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0010	1134	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD47_chr3_108038091_108096031	1/1	c0001	972	386	98	66	162	16	42	copy fasta	CD47	chr3	108038091	108096031
CD48_chr1_160673746_160716822	1/1	c0001	732	330	64	61	158	13	32	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0002	732	51	17	12	16	1	5	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0003	732	30	7	5	13	2	3	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0004	732	6	0	0	6	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0005	732	6	0	0	4	0	2	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0006	732	4	0	0	2	0	2	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0007	732	2	2	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0008	732	2	2	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0009	732	2	1	1	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0010	732	2	0	0	0	0	2	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0011	732	2	0	2	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0012	732	2	2	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0013	732	1	0	0	1	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0014	732	1	0	1	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	c0015	732	1	1	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD4_chr12_6784528_6825799	0/1	c0001	1377	290	45	43	170	7	24	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	1/0	c0002	1377	78	15	23	15	9	15	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0003	1377	38	22	2	13	0	1	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0004	1377	7	0	0	4	0	3	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0005	1377	5	3	2	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0006	1377	4	3	1	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0007	1377	3	0	0	3	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0008	1377	2	0	0	2	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0009	1377	2	1	1	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0010	1377	2	2	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0011	1377	2	2	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0012	1377	1	0	0	1	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0013	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0015	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0016	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0017	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0018	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0019	1377	1	0	0	0	0	1	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	c0020	1377	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD52_chr1_26312958_26325523	0/1	c0001	186	229	61	52	84	10	21	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	1/0	c0002	186	154	28	10	90	8	17	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	c0003	186	20	0	14	6	0	0	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	c0004	186	1	1	0	0	0	0	copy fasta	CD52	chr1	26312958	26325523
CD53_chr1_110868148_110904922	1/1	c0001	660	437	92	70	209	16	48	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	c0002	660	1	0	0	1	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	c0003	660	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	c0004	660	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922