JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD53_chr1_110868148_110904922	0/0	c0005	660	1	0	0	0	0	1	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	c0006	660	1	0	0	0	0	1	copy fasta	CD53	chr1	110868148	110904922
CD55_chr1_207316678_207365966	1/1	c0001	1146	345	81	61	155	12	34	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0002	1146	3	3	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0003	1146	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0004	1146	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0005	1146	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0007	1146	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0008	1146	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0009	1146	1	0	1	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	c0010	1158	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD58_chr1_116509534_116576026	1/1	c0001	753	243	52	54	92	5	38	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0002	753	23	16	5	1	1	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0003	753	13	9	0	4	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0004	753	4	4	0	0	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0005	753	3	0	1	2	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0006	753	1	1	0	0	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	c0007	753	1	0	0	1	0	0	copy fasta	CD58	chr1	116509534	116576026
CD59_chr11_33698010_33741423	1/1	c0001	387	377	82	62	169	14	48	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	c0002	387	1	0	0	1	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	c0003	387	1	1	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD59_chr11_33698010_33741423	0/0	c0004	387	1	1	0	0	0	0	copy fasta	CD59	chr11	33698010	33741423
CD5L_chr1_157825911_157846808	1/1	c0001	1044	363	79	62	171	16	33	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	c0002	1044	60	15	12	32	0	1	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	c0003	1044	2	0	2	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	c0004	1044	2	2	0	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	c0005	1044	1	0	0	1	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5_chr11_61097489_61132852	0/1	c0001	1488	105	22	27	32	8	15	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0002	1488	40	21	5	7	3	4	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0003	1488	32	6	20	0	4	2	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0004	1488	19	17	2	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	1/0	c0005	1488	10	0	3	0	3	3	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0006	1488	9	6	2	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0007	1488	7	3	1	0	0	3	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0008	1488	7	2	4	0	0	1	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0009	1488	4	4	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0010	1488	3	2	0	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0011	1488	3	3	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0012	1488	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0013	1488	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0014	1488	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0015	1488	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	c0016	1488	1	0	0	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD63_chr12_55720323_55734009	1/1	c0001	717	411	90	74	190	13	42	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0002	717	6	6	0	0	0	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0003	717	2	0	0	2	0	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0004	717	1	0	0	0	0	1	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0005	717	1	0	0	0	0	1	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0006	717	1	0	0	0	1	0	copy fasta	CD63	chr12	55720323	55734009