JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD63_chr12_55720323_55734009	0/0	c0007	717	1	0	0	1	0	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	c0008	717	1	0	0	1	0	0	copy fasta	CD63	chr12	55720323	55734009
CD68_chr17_7574638_7587111	1/1	c0001	1065	364	76	69	170	15	32	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0002	1065	31	3	4	18	2	4	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0003	1065	25	9	4	10	0	2	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0004	1065	4	4	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0005	1065	4	1	2	0	1	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0006	1065	2	2	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0007	1065	1	0	1	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0008	1065	1	0	0	1	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0009	1065	1	0	0	1	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	c0010	1065	1	1	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD69_chr12_9747486_9765901	1/1	c0001	600	435	91	75	208	16	43	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0002	600	5	0	5	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0003	600	2	0	1	0	0	1	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0004	600	2	0	0	2	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0005	600	1	0	0	1	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0006	600	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0007	600	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0008	600	1	0	0	1	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0009	600	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	c0010	600	1	0	1	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD6_chr11_60966680_61025377	1/0	c0001	2007	84	6	15	47	6	9	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0002	2007	43	24	4	14	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0003	2007	41	17	14	3	1	6	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/1	c0004	2007	27	4	14	0	3	5	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0005	2007	26	1	1	17	0	7	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0006	2007	21	1	12	3	1	4	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0007	2007	20	20	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0008	2007	8	0	0	6	0	2	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0009	2007	5	5	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0010	2007	5	4	1	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0011	2007	5	5	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0012	2007	5	1	2	0	0	2	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0013	2007	3	0	0	3	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0014	2007	1	0	0	1	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0015	2007	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0016	2007	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0017	2007	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0018	2007	1	0	1	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0019	2007	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0020	2007	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0021	2007	1	0	0	0	1	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	c0022	2007	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD70_chr19_6580839_6596150	1/0	c0001	582	269	79	57	86	15	31	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/1	c0002	582	184	17	25	122	3	16	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	c0003	582	1	1	0	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	c0004	582	1	0	0	0	0	1	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	c0005	582	1	1	0	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD72_chr9_35604982_35623413	1/1	c0001	1080	361	71	66	164	13	45	copy fasta	CD72	chr9	35604982	35623413