JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD72_chr9_35604982_35623413	0/0	c0002	1080	20	15	1	0	1	3	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	c0003	1080	4	4	0	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	c0004	1080	2	0	0	2	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	c0006	1080	1	1	0	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	c0007	1080	1	0	1	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD74_chr5_150396639_150417910	1/1	c0001	891	399	92	78	165	16	46	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0002	891	2	2	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0003	891	2	0	0	2	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0004	891	2	2	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0005	891	1	1	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0006	891	1	0	0	1	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	c0007	891	1	1	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD79A_chr19_41872279_41886372	1/1	c0001	681	384	78	61	191	14	38	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0002	681	2	0	2	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0003	681	2	0	2	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0004	681	1	0	0	0	0	1	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0005	681	1	0	1	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0006	681	1	0	0	0	0	1	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	c0007	681	1	0	0	1	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79B_chr17_63923740_63937331	0/1	c0001	690	206	61	30	83	13	18	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	1/0	c0002	690	170	35	33	78	3	20	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	c0003	690	1	0	1	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	c0004	690	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	c0005	690	1	0	0	1	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	c0006	690	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD7_chr17_82309873_82322608	1/1	c0001	723	394	89	73	172	17	41	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0002	696	6	0	6	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0003	723	4	0	1	0	0	3	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0004	723	4	4	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0005	723	2	0	0	2	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0006	723	2	2	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0007	723	1	1	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0008	723	1	0	0	1	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0009	723	1	0	0	0	1	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	c0010	723	1	0	0	1	0	0	copy fasta	CD7	chr17	82309873	82322608
CD80_chr3_119519293_119564614	1/1	c0001	867	302	67	63	126	9	35	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0002	867	107	19	16	56	5	11	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0003	867	4	4	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0004	867	4	0	0	4	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0005	867	3	3	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0006	867	2	0	2	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0007	867	1	0	0	1	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0008	867	1	0	1	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0009	867	1	0	0	1	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	c0010	867	1	1	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD81_chr11_2372310_2402397	1/1	c0001	711	333	50	70	155	14	42	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	c0002	711	31	22	1	8	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	c0003	711	15	13	2	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	c0004	711	6	5	1	0	0	0	copy fasta	CD81	chr11	2372310	2402397