JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD81_chr11_2372310_2402397	0/0	c0005	711	1	1	0	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	c0006	711	1	1	0	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	c0007	711	1	0	0	1	0	0	copy fasta	CD81	chr11	2372310	2402397
CD82_chr11_44560663_44625358	1/0	c0001	804	105	41	24	24	6	9	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0002	804	62	1	15	32	1	13	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0003	804	47	21	17	3	1	5	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0004	804	28	1	8	7	2	10	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0005	804	19	1	0	18	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/1	c0006	804	15	0	1	10	2	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0007	804	14	3	9	1	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0008	804	13	0	0	11	0	2	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0009	804	13	4	0	8	1	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0010	804	12	4	3	5	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0011	804	11	0	0	11	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0012	804	5	5	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0013	804	4	0	1	0	3	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0014	804	4	0	0	3	0	1	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0015	804	4	3	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0016	804	3	3	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0017	804	3	0	0	3	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0018	804	2	2	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0019	804	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0020	804	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0021	804	1	0	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0022	804	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0023	804	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0024	804	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0025	804	1	1	0	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	c0026	804	1	0	1	0	0	0	copy fasta	CD82	chr11	44560663	44625358
CD83_chr6_14112772_14141906	1/1	c0001	618	377	80	71	162	14	48	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	c0002	618	45	11	8	22	2	2	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	c0003	618	9	2	1	6	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	c0004	618	6	6	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	c0005	618	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD84_chr1_160536098_160584496	1/1	c0001	987	372	93	76	156	12	33	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0002	987	2	2	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0003	987	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0004	987	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0005	987	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0006	987	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0007	987	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	c0008	987	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD86_chr3_122050362_122126136	0/1	c0001	990	147	47	37	38	7	17	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0002	990	113	11	17	60	4	21	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	1/0	c0003	990	37	26	6	0	1	3	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0004	990	2	0	0	2	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0005	990	1	0	0	0	0	1	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0006	990	1	0	0	1	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0007	990	1	0	0	1	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	c0008	990	1	1	0	0	0	0	copy fasta	CD86	chr3	122050362	122126136