JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD86_chr3_122050362_122126136	0/0	c0009	990	1	1	0	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD8A_chr2_86779610_86795913	1/1	c0001	708	323	68	63	142	11	37	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0002	708	30	11	5	10	3	1	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0003	708	10	7	3	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0004	708	5	5	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0005	708	4	4	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0006	708	3	0	3	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0007	708	1	1	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0008	708	1	0	0	1	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	c0009	708	1	0	0	1	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8B2_chr2_106482364_106516095	0/0	c0001	633	134	34	31	39	5	25	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0002	633	122	15	19	76	1	11	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	1/1	c0003	633	83	44	20	1	10	6	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0004	633	7	0	6	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0005	633	1	1	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0006	633	1	0	0	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0007	633	1	0	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	c0008	633	1	0	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B_chr2_86833167_86866886	0/0	c0001	633	178	48	18	85	5	22	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	1/1	c0002	633	93	14	25	37	5	10	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0003	633	67	4	18	35	3	7	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0004	633	18	4	3	10	1	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0005	633	9	7	1	1	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0006	633	8	8	0	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0007	633	6	5	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0008	633	5	0	5	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0009	633	4	2	2	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0010	633	2	0	0	2	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0011	449	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	c0012	633	1	0	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD93_chr20_23074360_23091324	0/0	c0001	1959	187	18	40	101	9	19	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	1/0	c0002	1959	56	12	7	28	1	7	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0003	1959	53	24	16	8	2	3	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/1	c0004	1959	30	13	5	9	0	2	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0005	1959	27	6	0	21	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0006	1959	9	9	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0007	1959	5	2	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0008	1959	4	3	1	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0009	1959	4	0	0	4	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0010	1959	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0011	1959	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0012	1959	3	0	3	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0013	1959	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0014	1959	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0015	1959	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0016	1959	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0017	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0018	1959	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0019	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0020	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324