Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSM3_chr16_20759014_20802581	0/0	c0005	1761	4	4	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0006	1761	3	0	0	3	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0007	1761	2	0	0	0	0	2	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0008	1761	2	2	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0009	1761	2	2	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0010	1761	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0011	1761	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0012	1761	1	1	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0013	1761	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0014	1761	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0015	1761	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0016	1761	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0017	1761	1	1	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	c0018	1761	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM4_chr12_7299072_7333719	1/0	c0001	1743	264	53	47	119	8	36	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/1	c0002	1743	111	11	23	59	10	7	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0003	1743	16	14	2	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0004	1743	12	5	2	5	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0005	1743	8	8	0	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0006	1743	3	3	0	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0007	1743	3	0	0	3	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0008	1743	3	0	0	3	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0009	1743	2	0	0	2	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0010	1743	1	0	0	0	0	1	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0011	1743	1	0	0	0	0	1	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0012	1743	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0013	1743	1	1	0	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0014	1743	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0015	1743	1	0	0	0	0	1	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0016	1743	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	c0017	1743	1	1	0	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM5_chr16_20404534_20446336	0/1	c0001	1740	144	29	12	88	4	10	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	1/0	c0002	1740	129	17	49	39	6	17	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0003	1740	46	0	3	38	1	4	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0004	1740	21	6	0	13	0	2	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0005	1740	12	3	5	1	0	3	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0006	1740	8	5	0	3	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0007	1740	8	8	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0008	1740	7	7	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0009	1740	6	6	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0010	1740	6	6	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0011	1740	4	0	0	4	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0012	1740	4	0	0	4	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0013	1740	3	3	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0014	1740	2	0	0	0	0	2	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0015	1740	2	0	0	0	2	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0016	1740	2	1	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0017	1740	2	2	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0018	1740	2	0	2	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0019	1746	2	0	0	2	0	0	copy fasta	ACSM5	chr16	20404534	20446336