JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD93_chr20_23074360_23091324	0/0	c0021	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0022	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0023	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0024	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0025	1959	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0026	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0027	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0028	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0029	1959	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	c0030	1959	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD96_chr3_111537197_111657372	0/0	c0001	1710	255	63	48	100	12	32	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0002	1710	21	1	1	17	0	2	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0003	1710	4	3	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/1	c0004	1710	4	0	1	0	2	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	1/0	c0005	1710	4	3	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0006	1710	3	3	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0007	1710	1	0	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0008	1710	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0009	1710	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0010	1710	1	0	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0011	1710	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0012	1710	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0013	1710	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0014	1710	1	0	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	c0015	1710	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD99L2_chrX_150761336_150903668	1/1	c0001	789	201	56	34	74	13	22	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	c0002	789	8	4	0	4	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	c0003	789	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	c0004	787	1	0	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	c0005	789	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99_chrX_2686295_2746309	1/1	c0001	558	123	46	13	52	3	7	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0002	558	58	0	16	31	4	7	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0003	558	11	4	3	2	0	2	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0004	558	9	3	6	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0005	558	5	0	0	5	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0006	558	5	1	2	2	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0007	558	4	0	2	1	0	1	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0008	558	4	4	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0009	558	2	0	2	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0010	559	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0011	558	1	1	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0012	558	1	1	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0013	557	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0014	558	1	1	0	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0015	558	1	0	0	0	1	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	c0016	558	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD9_chr12_6195400_6243266	1/1	c0001	687	370	90	62	169	8	39	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	c0002	687	2	0	0	2	0	0	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	c0003	687	2	0	0	2	0	0	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	c0004	712	1	0	0	1	0	0	copy fasta	CD9	chr12	6195400	6243266