JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CD9_chr12_6195400_6243266	0/0	c0005	687	1	0	0	0	0	1	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	c0006	687	1	1	0	0	0	0	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	c0007	687	1	1	0	0	0	0	copy fasta	CD9	chr12	6195400	6243266
CDADC1_chr13_49242925_49298485	1/1	c0001	1545	363	84	66	156	14	41	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	c0002	1545	2	2	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	c0003	1545	1	1	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	c0004	1545	1	1	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	c0005	1545	1	0	0	0	0	1	copy fasta	CDADC1	chr13	49242925	49298485
CDAN1_chr15_42718544_42742128	1/1	c0001	3684	152	8	31	84	9	18	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0002	3684	59	17	9	13	4	16	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0003	3684	42	14	1	26	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0004	3684	21	18	1	0	0	2	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0005	3684	14	13	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0006	3684	11	0	1	9	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0007	3684	8	8	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0008	3684	5	0	1	4	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0009	3684	5	0	0	5	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0010	3684	2	0	2	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0011	3684	2	0	0	2	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0012	3684	2	2	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0013	3684	2	2	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0014	3684	2	2	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0015	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0016	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0017	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0018	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0019	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0020	3684	1	0	0	0	1	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0021	3684	1	0	0	0	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0022	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0023	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0024	3684	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0025	3684	1	0	0	0	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0026	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0027	3684	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0028	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0029	3684	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0030	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0031	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0032	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0033	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0034	3684	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	c0035	3684	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDA_chr1_20584097_20623903	1/0	c0001	441	250	50	36	129	5	29	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	c0002	441	84	35	15	24	5	5	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	c0003	441	43	1	6	28	2	6	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/1	c0004	441	31	6	15	3	2	4	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	c0005	441	4	0	0	4	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	c0006	441	3	2	1	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	c0007	441	2	0	0	2	0	0	copy fasta	CDA	chr1	20584097	20623903