JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDA_chr1_20584097_20623903	0/0	c0008	441	1	0	1	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDC123_chr10_12191188_12255589	1/1	c0001	1011	388	88	76	168	16	38	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	c0002	1011	2	0	0	2	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	c0003	1011	1	0	0	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	c0004	1011	1	0	0	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC14A_chr1_100347506_100525277	1/1	c0001	1785	241	48	46	107	8	30	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0002	1785	29	4	6	12	2	5	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0003	1785	17	16	1	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0004	1785	8	8	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0005	1785	3	3	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0006	1785	1	0	0	1	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0008	1785	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0009	1785	1	0	1	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0010	1785	1	0	0	0	0	1	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0011	1785	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0012	1785	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	c0013	1785	1	1	0	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14B_chr9_96495113_96624843	1/1	c0001	1497	167	33	43	51	12	26	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	c0002	1497	42	35	7	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	c0003	1497	7	6	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	c0004	1497	2	1	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	c0005	1497	1	1	0	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	c0006	1497	1	0	0	1	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14C_chr7_48919547_48932454	0/0	c0001	1344	153	38	21	72	5	17	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	1/0	c0002	1344	150	36	37	58	8	10	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/1	c0003	1344	112	0	12	82	3	14	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0004	1344	10	3	2	1	0	4	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0005	1344	9	8	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0006	1345	7	0	1	6	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0007	1344	3	2	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0008	1344	3	1	2	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0009	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0010	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0011	1344	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0012	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0013	1344	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0014	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0015	1344	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0016	1344	1	0	0	0	0	1	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0017	1344	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0018	1344	1	0	0	0	0	1	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0019	1344	1	0	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0020	1344	1	0	0	0	0	1	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0021	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0022	1344	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	c0023	1344	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC16_chr13_114229897_114277723	1/1	c0001	1863	206	14	36	119	16	19	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0002	1863	121	49	20	32	0	20	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0003	1863	23	12	6	5	0	0	copy fasta	CDC16	chr13	114229897	114277723