JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC16_chr13_114229897_114277723	0/0	c0004	1863	14	0	7	6	0	1	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0005	1863	12	9	3	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0006	1863	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0007	1863	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0008	1863	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC16_chr13_114229897_114277723	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	CDC16	chr13	114229897	114277723
CDC20B_chr5_55107971_55178177	0/0	c0001	1560	135	31	21	61	6	16	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0002	1560	95	32	12	41	2	8	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/1	c0003	1560	70	4	10	34	5	16	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	1/0	c0004	1560	9	5	2	0	1	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0005	1560	8	8	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0006	1560	4	1	3	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0007	1560	2	0	0	2	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0008	1560	2	2	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0009	1560	1	0	0	1	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0010	1560	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0011	1560	1	0	1	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0012	1560	1	0	0	1	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	c0013	1560	1	0	1	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20_chr1_43353981_43368203	1/1	c0001	1500	274	64	37	129	7	35	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0002	1500	81	26	30	18	5	2	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0003	1500	2	2	0	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0004	1500	2	0	0	2	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0005	1500	2	0	0	0	0	2	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0006	1500	1	1	0	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0007	1500	1	0	0	0	0	1	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0008	1500	1	0	0	1	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0009	1500	1	0	1	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0010	1500	1	0	1	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0011	1500	1	1	0	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	c0012	1500	1	0	1	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC23_chr5_138182650_138218323	1/1	c0001	1794	379	83	77	158	16	43	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0002	1794	4	3	1	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0003	1794	3	3	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0004	1794	1	1	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0005	1794	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0006	1794	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0007	1794	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0008	1794	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	c0009	1794	1	0	0	0	0	1	copy fasta	CDC23	chr5	138182650	138218323
CDC25A_chr3_48152146_48193417	1/1	c0001	1575	331	77	65	137	11	39	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	c0002	1575	3	0	3	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	c0003	1575	3	0	2	0	1	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	c0004	1575	1	1	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	c0005	1575	1	0	0	1	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	c0006	1575	1	0	0	0	0	1	copy fasta	CDC25A	chr3	48152146	48193417
CDC25B_chr20_3791310_3811115	1/0	c0001	1743	309	87	51	120	14	36	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/1	c0002	1743	98	5	18	64	2	8	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0003	1743	8	3	4	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0004	1743	4	0	1	0	2	1	copy fasta	CDC25B	chr20	3791310	3811115