JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC25B_chr20_3791310_3811115	0/0	c0005	1743	4	0	0	4	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0006	1743	2	0	0	2	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0007	1743	2	2	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0008	1743	1	0	0	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0009	1743	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0011	1743	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0012	1743	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0013	1743	1	0	0	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0014	1743	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0015	1743	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	c0016	1743	1	0	0	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25C_chr5_138280269_138336804	1/1	c0001	1422	200	37	44	79	10	28	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0002	1422	152	41	17	79	4	11	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0003	1422	4	1	3	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0004	1422	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0005	1422	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0006	1422	1	0	0	0	0	1	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0007	1422	1	1	0	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0008	1422	1	0	1	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	c0009	1422	1	0	1	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC26_chr9_113261992_113280572	1/1	c0001	258	432	88	76	206	16	44	copy fasta	CDC26	chr9	113261992	113280572
CDC27_chr17_47112703_47194295	1/1	c0001	2475	324	76	56	138	11	41	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0002	2475	12	9	3	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0003	2475	11	0	8	0	3	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0004	2475	7	2	3	0	0	2	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0005	2475	1	0	1	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0006	2475	1	0	0	0	0	1	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0007	2475	1	1	0	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	c0008	2475	1	0	1	0	0	0	copy fasta	CDC27	chr17	47112703	47194295
CDC34_chr19_526760_547087	1/1	c0001	711	301	81	58	120	13	27	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0002	711	21	4	3	10	1	3	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0003	711	2	0	1	0	0	1	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0004	711	1	0	0	1	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0005	711	1	0	0	1	0	0	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0006	711	1	0	0	0	0	1	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	c0007	711	1	1	0	0	0	0	copy fasta	CDC34	chr19	526760	547087
CDC37L1_chr9_4674569_4713399	1/1	c0001	1014	346	91	64	146	10	33	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0002	1014	68	1	6	53	0	8	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0003	1014	2	0	0	2	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0004	1014	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	c0007	1014	1	1	0	0	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37_chr19_10386133_10408542	1/1	c0001	1137	370	82	62	168	10	46	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	c0002	1137	7	5	2	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	c0003	1137	7	7	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	c0004	1137	2	0	0	2	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	c0005	1137	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	c0006	1137	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542