JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC40_chr6_110175427_110237232	1/1	c0001	1740	322	83	52	137	12	36	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0002	1740	2	2	0	0	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0003	1740	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0004	1740	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0005	1685	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0006	1740	1	1	0	0	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0007	1740	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	c0008	1740	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC42BPA_chr1_226984865_227323492	0/0	c0001	5265	94	32	16	34	5	7	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0002	5265	58	5	16	32	3	2	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0003	5265	39	5	10	17	1	6	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0004	5265	31	6	7	9	2	7	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0005	5265	26	1	6	14	0	5	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0006	5265	25	21	4	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0007	5265	22	0	4	13	1	4	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0008	5265	12	2	6	0	2	2	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0009	5265	7	0	0	6	0	1	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	1/1	c0010	5265	4	0	1	0	0	1	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0011	5265	4	0	0	4	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0012	5265	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0013	5265	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0014	5265	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0015	5265	2	0	2	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0016	5265	2	0	0	0	0	2	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0017	5265	2	2	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0018	5265	2	0	1	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0019	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0020	5265	1	0	0	0	0	1	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0021	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0022	5265	1	1	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0023	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0024	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0025	5265	1	0	1	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0026	5265	1	0	1	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0027	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0028	5265	1	0	1	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0029	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0030	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	c0031	5265	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPB_chr14_102927380_103062549	0/1	c0001	5136	174	33	44	75	2	19	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	1/0	c0002	5136	109	30	15	45	4	14	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0003	5136	6	5	0	1	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0004	5136	3	1	2	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0005	5136	2	1	1	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0006	5136	2	2	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0007	5136	2	2	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0008	5136	2	0	1	0	1	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0009	5136	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0010	5136	1	0	0	0	0	1	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	c0011	5136	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549