JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC42BPG_chr11_64818052_64849653	0/0	c0034	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0035	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0036	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0037	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0038	4656	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0039	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0040	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0041	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0042	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0043	4656	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0044	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0045	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0046	4656	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0047	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0048	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0049	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0050	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0051	4656	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0052	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0053	4656	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0054	4656	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0055	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0056	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	c0057	4656	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42EP1_chr22_37555480_37574405	1/0	c0001	1176	236	38	34	132	6	25	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/1	c0002	1155	150	10	31	74	11	23	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0003	1176	13	12	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0004	1176	9	8	0	0	1	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0005	1176	8	8	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0006	1176	6	5	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0007	1176	5	4	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0008	1155	3	0	0	3	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0009	1176	2	0	0	2	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0010	1176	2	2	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0011	1155	1	0	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0012	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0013	1176	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0014	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0015	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0016	1155	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0017	1176	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0018	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0019	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0020	1155	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0021	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0022	1176	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0023	1176	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	c0024	1155	1	0	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP2_chr11_65309866_65327417	1/1	c0001	633	307	67	62	118	18	40	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	c0002	633	17	16	1	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417