JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC42EP2_chr11_65309866_65327417	0/0	c0003	633	5	4	1	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	c0004	633	4	4	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	c0005	633	4	4	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	c0006	633	1	1	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP3_chr2_37636944_37676642	1/1	c0001	765	426	94	78	194	16	42	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	c0002	765	2	2	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	c0003	765	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP3_chr2_37636944_37676642	0/0	c0004	765	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP4_chr17_73278624_73317001	1/1	c0001	1071	388	83	77	164	16	46	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0002	1071	4	4	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0003	1071	3	1	0	0	0	2	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0004	1071	2	2	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0005	1071	2	0	0	2	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0006	1071	2	2	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0007	1071	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0008	1071	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0009	1071	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0010	1071	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0011	1071	1	0	1	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0012	1071	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	c0013	1071	1	1	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP5_chr19_54460026_54478296	0/1	c0001	447	366	82	71	154	13	45	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0002	447	27	9	3	13	0	2	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0003	447	12	3	3	6	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0004	447	9	0	0	9	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0005	447	2	0	0	2	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0006	447	2	2	0	0	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0007	447	1	0	0	0	1	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0008	447	1	0	0	0	0	1	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	c0009	447	1	0	1	0	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42SE1_chr1_151045985_151064622	1/1	c0001	240	340	93	58	134	14	39	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	c0002	240	1	1	0	0	0	0	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE1_chr1_151045985_151064622	0/0	c0003	240	1	0	0	0	0	1	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE2_chr5_131259053_131399672	1/1	c0001	255	255	75	62	76	10	30	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42SE2_chr5_131259053_131399672	0/0	c0002	255	1	1	0	0	0	0	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42_chr1_22047709_22106360	1/1	c0001	576	347	71	71	145	14	44	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	c0002	576	3	2	1	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	c0003	576	1	0	0	1	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC42_chr1_22047709_22106360	0/0	c0004	576	1	1	0	0	0	0	copy fasta	CDC42	chr1	22047709	22106360
CDC45_chr22_19474920_19525608	1/1	c0001	1701	341	65	64	178	10	22	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0002	1701	45	11	7	24	0	3	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0003	1701	14	13	1	0	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0004	1701	9	0	2	2	0	5	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0005	1701	1	0	0	0	0	1	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0006	1701	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0007	1701	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0008	1701	1	1	0	0	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0009	1701	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0010	1701	1	0	0	0	0	1	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	c0011	1701	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608