JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDC5L_chr6_44382706_44455425	1/1	c0001	2409	166	52	30	65	5	12	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0002	2409	92	1	8	70	1	12	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0003	2409	43	3	14	21	2	3	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0004	2409	30	14	0	15	0	1	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0005	2409	8	6	2	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0006	2409	3	3	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0007	2409	2	0	0	2	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0008	2409	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0009	2409	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0010	2409	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0011	2409	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0012	2409	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0013	2409	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0014	2409	1	0	0	1	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	c0015	2409	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC6_chr17_40282879_40309657	1/0	c0001	1683	189	40	38	76	5	29	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/1	c0002	1683	94	12	10	64	2	5	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0003	1683	32	30	2	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0004	1683	3	3	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0005	1683	2	0	1	0	1	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0006	1683	2	0	0	2	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0007	1683	1	1	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0008	1683	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0009	1683	1	0	0	0	0	1	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0010	1683	1	0	0	0	0	1	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0011	1683	1	0	1	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0013	1683	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	c0014	1683	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC73_chr1_193117031_193259815	1/1	c0001	1596	272	78	46	116	10	20	copy fasta	CDC73	chr1	193117031	193259815
CDC73_chr1_193117031_193259815	0/0	c0002	1596	2	2	0	0	0	0	copy fasta	CDC73	chr1	193117031	193259815
CDC7_chr1_91495851_91530764	0/1	c0001	1725	273	61	57	112	11	31	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	1/0	c0002	1725	107	24	15	53	5	9	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0003	1725	4	0	0	2	0	2	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0004	1725	4	4	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0005	1725	3	0	0	3	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0006	1725	1	0	0	1	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0007	1725	1	0	0	1	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	c0008	1725	1	1	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDCA2_chr8_25454233_25512911	1/1	c0001	3072	151	33	20	77	4	15	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0002	3072	67	10	19	31	1	6	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0003	3072	52	2	12	19	7	12	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0004	3072	16	15	1	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0005	3072	9	9	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0006	3072	4	0	0	4	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0007	3072	4	4	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0008	3072	4	3	1	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0009	3072	3	0	0	3	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0010	3072	3	3	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0011	3072	3	3	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911