Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSM5_chr16_20404534_20446336	0/0	c0020	1740	2	0	0	0	2	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0021	1740	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0022	1740	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0023	1740	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0024	1740	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0025	1740	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0026	1740	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0027	1740	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0028	1740	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0029	1740	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0030	1740	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0031	1536	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0032	1740	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0033	1740	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0034	1740	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0035	1740	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0036	1740	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0037	1740	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0038	1740	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0039	1740	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0040	1740	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0041	1740	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	c0042	1746	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM6_chr10_95189238_95233929	1/0	c0001	1443	203	37	28	106	7	24	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/1	c0002	1443	42	1	12	8	4	16	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0003	1443	39	22	12	0	3	2	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0004	1443	17	17	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0005	1443	7	1	4	0	2	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0006	1443	2	2	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0008	1443	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0009	1443	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	c0010	1443	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSS1_chr20_25001237_25063139	1/0	c0001	2070	98	22	25	26	7	17	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0002	2070	32	1	6	20	0	5	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0003	2070	22	9	8	0	4	1	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0004	2070	13	1	5	2	1	4	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0005	2070	11	0	1	10	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0006	2070	11	10	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0007	2070	8	5	3	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0008	2070	7	7	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0009	2070	5	5	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0010	2070	3	0	3	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0011	2070	3	3	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/1	c0012	2070	3	1	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0013	2070	3	3	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0014	2070	3	3	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0015	2070	3	2	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0016	2070	2	2	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0017	2070	2	1	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139