JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDCA2_chr8_25454233_25512911	0/0	c0012	3072	2	0	0	0	2	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0013	3072	1	0	0	0	1	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0014	3072	1	0	0	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0015	3072	1	0	1	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0016	3072	1	0	0	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0017	3072	1	0	0	0	1	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0018	3072	1	1	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0019	3072	1	1	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	c0020	3072	1	0	0	0	0	1	copy fasta	CDCA2	chr8	25454233	25512911
CDCA3_chr12_6843828_6856286	1/1	c0001	807	394	86	72	172	16	46	copy fasta	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	c0002	807	1	0	0	1	0	0	copy fasta	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	c0003	807	1	0	0	1	0	0	copy fasta	CDCA3	chr12	6843828	6856286
CDCA4_chr14_105004573_105026083	1/0	c0001	726	161	25	13	98	1	23	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0002	726	124	45	20	51	4	4	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/1	c0003	726	122	12	36	49	7	17	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0004	726	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0005	726	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0006	726	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0007	726	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	c0008	726	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA5_chr11_65072453_65089040	1/1	c0001	759	350	89	75	130	18	36	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	c0002	759	5	5	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	c0003	759	4	3	1	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	c0004	759	1	1	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA7L_chr7_21895899_21950899	1/1	c0001	1365	259	87	46	82	14	28	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0002	1365	151	10	25	98	2	16	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0003	1365	10	0	0	10	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0004	1365	3	0	0	2	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0005	1365	3	1	1	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0006	1365	2	0	2	0	0	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0007	1365	2	0	0	0	2	0	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0008	1365	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	c0009	1365	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7_chr2_173349872_173373997	1/1	c0001	1353	447	85	81	217	16	46	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	c0002	1353	10	9	1	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	c0003	1353	1	1	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	c0004	1353	1	1	0	0	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	c0005	1353	1	0	0	1	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA8_chr1_37687516_37714719	1/1	c0001	843	405	92	72	180	16	43	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	c0002	843	4	4	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	c0003	828	1	1	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	c0004	843	1	1	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	c0005	843	1	0	0	0	0	1	copy fasta	CDCA8	chr1	37687516	37714719
CDCP1_chr3_45077277_45151378	0/0	c0001	2511	214	24	42	109	9	30	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0002	2511	49	24	12	5	2	6	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/1	c0003	2511	31	7	12	7	1	3	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0004	2511	19	0	0	19	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0005	2511	15	6	5	1	1	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	1/0	c0006	2511	12	9	2	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0007	2511	8	4	0	4	0	0	copy fasta	CDCP1	chr3	45077277	45151378