JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDCP1_chr3_45077277_45151378	0/0	c0008	2511	8	0	0	8	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0009	2511	5	5	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0010	2511	2	2	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0011	2511	2	2	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0012	2511	2	0	0	0	0	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0013	2511	2	0	1	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0014	2511	2	0	0	2	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0015	2511	2	2	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0016	2511	2	0	0	0	1	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0017	2511	1	0	0	1	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0018	2470	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0019	2511	1	0	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0020	2511	1	0	0	0	0	1	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0021	2511	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0022	2511	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0023	2511	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0024	2511	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	c0025	2511	1	0	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP2_chr1_54127687_54158000	0/1	c0001	1623	298	52	54	144	13	34	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0002	1623	39	1	4	25	4	5	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0003	1623	23	10	9	1	1	2	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0004	1623	15	13	1	0	0	1	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0005	1623	13	0	8	3	0	2	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0006	1623	5	2	2	0	0	1	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0007	1623	4	0	2	0	0	2	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0008	1623	4	4	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0009	1623	4	0	0	4	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0010	1623	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0011	1623	2	0	0	2	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0012	1623	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0013	1623	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0014	1623	2	1	1	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0015	1623	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	1/0	c0016	1623	2	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0017	1623	1	0	1	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0018	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0019	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0020	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0021	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0022	1623	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0023	1623	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0024	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0025	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0026	1623	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0027	1623	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0028	1623	1	0	0	0	0	1	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	c0029	1623	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDH10_chr5_24482100_24649978	1/1	c0001	2367	281	88	38	113	10	30	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0002	2367	2	0	2	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0003	2367	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978