JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH10_chr5_24482100_24649978	0/0	c0004	2367	1	1	0	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0005	2367	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0006	2367	1	1	0	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0007	2367	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0008	2367	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	c0009	2367	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH11_chr16_64938753_65127063	0/0	c0001	2391	81	9	20	45	3	4	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	1/0	c0002	2391	70	50	15	0	1	3	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0003	2391	68	12	10	35	2	9	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0004	2391	45	1	13	22	2	7	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0005	2391	21	1	8	7	0	5	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/1	c0006	2391	6	0	2	0	1	2	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0007	2391	3	3	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0008	2391	3	1	2	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0009	2391	2	0	0	2	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0010	2391	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0011	2391	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0012	2391	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0013	2391	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0014	2391	1	0	0	0	1	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0015	2391	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0016	2391	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0017	2391	1	0	0	0	0	1	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	c0018	2391	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH12_chr5_21745673_22858344	0/0	c0001	2385	19	17	1	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0002	2385	15	8	3	2	0	2	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0003	2385	8	7	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0004	2385	7	4	3	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0005	2385	2	2	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0006	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0007	2385	1	0	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0008	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0009	2385	1	0	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0010	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0011	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0012	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0013	2385	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	c0014	2385	1	0	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH13_chr16_82621969_83805640	0/0	c0001	2142	43	28	7	1	1	6	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0002	2142	31	13	11	3	0	4	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0003	2142	10	5	4	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0004	2142	8	2	4	2	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0005	2142	4	4	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0006	2142	3	3	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0007	2142	2	2	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0008	2142	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0009	2142	1	0	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0010	2142	1	0	0	0	0	1	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0011	2142	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0012	2142	1	0	1	0	0	0	copy fasta	CDH13	chr16	82621969	83805640