JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH13_chr16_82621969_83805640	0/0	c0013	2142	1	0	0	0	1	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0014	2142	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0015	2142	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	c0016	2142	1	1	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH15_chr16_89166748_89200492	1/0	c0001	2445	131	47	33	29	7	14	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/1	c0002	2445	67	5	3	53	1	4	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0003	2445	41	8	9	17	3	4	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0004	2445	31	2	5	18	0	6	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0005	2445	21	0	6	13	0	2	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0006	2445	15	0	0	14	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0007	2445	13	0	0	9	0	4	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0008	2445	12	1	4	0	4	3	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0009	2445	11	4	2	4	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0010	2445	6	5	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0011	2445	5	3	2	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0012	2445	5	0	0	5	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0013	2445	4	0	0	4	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0014	2445	4	0	0	4	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0015	2445	4	4	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0016	2445	2	2	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0017	2445	2	2	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0018	2445	2	0	0	0	1	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0019	2445	2	2	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0020	2445	2	0	2	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0021	2445	2	0	0	2	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0022	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0023	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0024	2445	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0025	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0026	2445	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0027	2445	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0028	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0029	2445	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0030	2445	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0031	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0032	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0033	2445	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0034	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0035	2445	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0036	2435	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0037	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0038	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0039	2445	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0040	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0041	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0042	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0043	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0044	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	c0045	2445	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH16_chr16_66903122_66923885	1/1	c0001	2490	288	67	53	119	11	36	copy fasta	CDH16	chr16	66903122	66923885