JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH16_chr16_66903122_66923885	0/0	c0002	2490	28	14	4	8	1	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0003	2490	20	0	0	19	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0004	2490	13	1	4	8	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0005	2490	11	11	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0006	2490	7	0	0	7	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0007	2490	3	3	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0008	2490	2	2	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0009	2490	2	0	0	2	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0010	2490	1	0	0	0	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0011	2490	1	0	0	0	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0012	2490	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0013	2490	1	0	0	1	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0014	2490	1	0	0	0	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0015	2490	1	0	0	0	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0016	2490	1	0	0	1	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0017	2490	1	0	0	1	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0018	2490	1	1	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0019	2490	1	1	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0020	2490	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	c0021	2490	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH17_chr8_94122162_94213555	0/1	c0001	2499	48	6	12	18	3	8	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0002	2499	43	1	7	27	2	6	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0003	2499	32	9	6	15	2	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0004	2499	29	0	12	11	0	6	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0005	2499	28	25	3	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0006	2499	26	2	4	15	1	4	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	1/0	c0007	2499	20	0	5	11	1	2	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0008	2499	19	0	2	15	0	2	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0009	2499	17	5	4	6	0	2	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0010	2499	14	11	1	0	1	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0011	2499	10	3	4	0	0	3	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0012	2499	9	1	6	0	2	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0013	2499	6	6	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0014	2499	6	6	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0015	2499	3	1	0	1	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0016	2499	3	3	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0017	2499	2	0	2	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0018	2499	2	0	0	2	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0019	2499	2	2	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0020	2499	2	0	2	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0021	2499	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0022	2499	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0023	2499	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0024	2499	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0025	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0026	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0027	2499	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0028	2499	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0029	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0030	2499	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555