JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH17_chr8_94122162_94213555	0/0	c0031	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0032	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0033	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0034	2499	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0035	2499	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0036	2499	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	c0037	2499	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH18_chr5_19466296_19993200	0/1	c0001	2373	104	55	17	14	8	9	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	1/0	c0002	2373	9	6	2	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0003	2373	9	0	6	0	1	2	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0004	2373	6	6	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0005	2373	4	4	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0006	2373	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0007	2373	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0009	2373	1	0	1	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0010	2373	1	0	0	0	0	1	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	c0011	2373	1	0	0	0	1	0	copy fasta	CDH18	chr5	19466296	19993200
CDH19_chr18_66496083_66609090	1/0	c0001	2319	188	62	24	88	3	10	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/1	c0002	2319	78	4	11	44	5	13	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0003	2319	32	5	3	21	0	3	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0004	2319	20	0	14	1	1	4	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0005	2319	6	6	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0006	2319	4	3	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0007	2319	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0008	2319	3	0	1	0	2	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0009	2319	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0010	2319	2	0	1	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0011	2319	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0012	2319	1	0	0	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0013	2319	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0014	2319	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0015	2319	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0016	2319	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0017	1880	1	0	0	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0018	2319	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0019	2319	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0020	2319	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0021	2319	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0022	2319	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0023	2319	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0024	2319	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	c0025	2319	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH1_chr16_68732292_68840537	0/1	c0001	2649	179	57	30	58	11	22	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	1/0	c0002	2649	89	7	27	39	2	13	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0003	2649	18	6	3	9	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0004	2649	6	5	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0005	2649	5	4	1	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0006	2649	3	1	2	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0007	2649	3	3	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537