JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH1_chr16_68732292_68840537	0/0	c0008	2649	2	0	0	2	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0009	2649	2	0	1	0	1	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0010	2649	1	0	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0011	2649	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0012	2649	1	0	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0013	2649	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0014	2649	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0015	2649	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0016	2649	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0017	2649	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	c0018	2649	1	1	0	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH20_chr18_61328430_61560779	0/0	c0001	2406	137	41	18	54	2	22	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/1	c0002	2406	83	19	21	32	4	6	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0003	2406	10	2	2	2	3	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0004	2406	8	7	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0005	2406	7	6	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0006	2406	5	4	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0007	2406	4	4	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0008	2406	3	1	2	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0009	2406	2	0	0	1	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0010	2406	2	2	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0011	2406	2	2	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0012	2406	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0013	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	1/0	c0014	2406	1	0	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0015	2406	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0016	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0017	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0018	2406	1	0	0	0	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0019	2406	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0020	2406	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0021	2406	1	0	0	0	1	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0022	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0023	2406	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0024	2406	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0025	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0026	2406	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0027	2406	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	c0028	2406	1	0	0	0	0	1	copy fasta	CDH20	chr18	61328430	61560779
CDH22_chr20_46168739_46313498	1/1	c0001	2487	281	78	50	108	12	31	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0002	2487	13	0	5	2	2	4	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0003	2487	6	6	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0004	2487	5	0	0	5	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0005	2487	3	2	1	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0006	2487	2	0	0	2	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0007	2487	1	0	0	1	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0008	2487	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0009	2487	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0010	2487	1	0	1	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	c0011	2487	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498