JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
CDH23_chr10_71391920_71820947	0/0	c0098	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0099	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0100	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0101	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0102	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0103	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0104	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0105	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0106	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0107	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0108	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0109	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0110	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0111	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0112	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0113	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0114	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0115	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0116	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0117	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0118	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0119	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0120	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0121	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0122	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0123	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0124	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0125	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0126	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0127	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0128	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0129	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0130	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0131	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0132	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0133	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0134	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0135	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0136	10065	1	0	0	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0137	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0138	10065	1	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0139	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0140	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0141	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0142	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0143	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0144	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0145	10065	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0146	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0147	10065	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947