Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACSS1_chr20_25001237_25063139	0/0	c0018	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0019	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0020	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0021	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0022	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0023	2070	1	0	0	1	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0024	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0025	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0026	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0027	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0028	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0029	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0030	2070	1	0	0	0	0	1	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0031	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	c0032	2070	1	1	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS2_chr20_34871612_34932959	0/0	c0001	2106	159	34	26	69	12	18	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	1/1	c0002	2106	97	5	19	57	4	10	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0003	2106	29	27	2	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0004	2106	9	9	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0005	2106	8	4	4	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0006	2106	2	2	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0007	2106	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0008	2106	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0009	2106	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0010	2106	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0011	2106	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0012	2106	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0013	2106	1	1	0	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS2_chr20_34871612_34932959	0/0	c0014	2106	1	0	1	0	0	0	copy fasta	ACSS2	chr20	34871612	34932959
ACSS3_chr12_81073079_81266210	1/0	c0001	2061	185	37	39	80	4	24	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0002	2061	53	5	7	34	2	5	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0003	2061	15	6	0	9	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0004	2061	11	8	0	3	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0005	2061	10	7	0	1	2	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/1	c0006	2061	3	0	2	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0007	2061	2	0	0	2	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0008	2061	2	2	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0009	2061	2	0	0	2	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0010	2061	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0011	2061	1	0	0	1	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0012	2061	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0013	2061	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0014	2061	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0015	2061	1	1	0	0	0	0	copy fasta	ACSS3	chr12	81073079	81266210
ACSS3_chr12_81073079_81266210	0/0	c0016	2061	1	0	0	0	0	1	copy fasta	ACSS3	chr12	81073079	81266210
ACTA1_chr1_229426245_229439094	1/1	c0001	1134	436	87	84	204	18	41	copy fasta	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	c0002	1134	6	6	0	0	0	0	copy fasta	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	c0003	1134	3	2	1	0	0	0	copy fasta	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	c0004	1134	3	0	0	2	0	1	copy fasta	ACTA1	chr1	229426245	229439094
ACTA1_chr1_229426245_229439094	0/0	c0005	1134	1	1	0	0	0	0	copy fasta	ACTA1	chr1	229426245	229439094