JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH23_chr10_71391920_71820947	0/0	c0148	10065	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0149	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0150	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0151	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0152	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0153	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0154	10065	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0155	10065	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0156	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0157	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0158	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0159	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0160	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0161	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0162	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0163	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0164	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0165	10065	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	c0166	10065	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH24_chr14_23042067_23062520	1/1	c0001	2346	342	62	58	181	8	31	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0002	2346	26	1	13	0	4	8	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0003	2346	16	14	2	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0004	2346	10	9	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0005	2346	6	2	0	3	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0006	2346	5	0	5	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0007	2346	3	3	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0008	2346	2	2	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0009	2346	2	2	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0010	2346	1	0	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	c0011	2346	1	1	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH26_chr20_59953423_60019529	1/1	c0001	2499	213	30	44	102	10	25	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0002	2499	18	8	1	7	1	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0003	2499	11	10	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0004	2500	9	7	2	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0005	2499	6	6	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0006	2499	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0007	2499	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0008	2499	3	0	0	0	2	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0009	2499	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0010	2499	2	0	1	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0011	2499	2	2	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0012	2499	2	0	0	0	0	2	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0013	2499	2	0	0	2	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0014	2499	2	0	2	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0015	2500	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0016	2499	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0017	2499	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0018	2499	1	0	0	0	1	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0019	2499	1	0	0	0	0	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0020	2499	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529