JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH26_chr20_59953423_60019529	0/0	c0021	2499	1	0	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0022	2499	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	c0023	2499	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH2_chr18_27945966_28182130	0/0	c0001	2721	150	55	24	39	9	23	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0002	2721	81	19	21	28	4	9	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/1	c0003	2721	23	4	2	15	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0004	2721	4	0	1	1	0	2	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0005	2721	2	2	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0006	2721	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0007	2721	1	0	0	0	1	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	1/0	c0008	2721	1	0	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0009	2721	1	0	0	0	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0010	2721	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0011	2721	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0012	2721	1	1	0	0	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	c0013	2721	1	0	0	1	0	0	copy fasta	CDH2	chr18	27945966	28182130
CDH3_chr16_68640310_68705292	1/0	c0001	2490	139	30	27	57	3	21	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/1	c0002	2490	92	2	20	57	4	8	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0003	2490	23	9	4	7	1	2	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0004	2490	16	16	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0005	2490	13	6	4	0	2	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0006	2490	11	11	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0007	2490	8	5	2	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0008	2490	7	1	4	0	1	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0009	2490	6	0	0	6	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0010	2490	5	0	0	4	1	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0011	2490	3	3	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0012	2490	3	0	0	2	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0013	2490	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0014	2490	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0015	2490	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0016	2490	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0017	2490	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0018	2490	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0019	2490	1	1	0	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0020	2490	1	0	0	0	0	1	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0021	2490	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0022	2490	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0023	2490	1	0	1	0	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH3_chr16_68640310_68705292	0/0	c0024	2490	1	0	0	1	0	0	copy fasta	CDH3	chr16	68640310	68705292
CDH4_chr20_61247261_61945617	0/0	c0001	2751	29	17	9	2	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0002	2751	16	6	6	2	0	2	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0003	2751	12	10	2	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0004	2751	10	6	3	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0005	2751	7	0	3	1	0	3	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0006	2751	4	3	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0007	2751	4	3	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0008	2751	3	1	0	2	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0009	2751	2	0	0	1	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0010	2751	2	2	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617