JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH4_chr20_61247261_61945617	0/0	c0011	2751	2	0	2	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0012	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0013	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0014	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0015	2751	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0016	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0017	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0018	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0019	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0020	2751	1	1	0	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0021	2751	1	0	0	0	0	1	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0022	2751	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0023	2751	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0024	2751	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0025	2751	1	0	0	1	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH4_chr20_61247261_61945617	0/0	c0026	2751	1	0	1	0	0	0	copy fasta	CDH4	chr20	61247261	61945617
CDH5_chr16_66361691_66409784	0/0	c0001	2355	150	29	25	86	5	5	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/1	c0002	2355	108	27	14	50	1	15	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	1/0	c0003	2355	81	12	18	27	5	18	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0004	2355	30	9	13	1	3	4	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0005	2355	9	8	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0006	2355	8	0	4	0	2	2	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0007	2355	3	0	0	0	0	3	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0008	2355	2	0	0	2	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0009	2355	2	0	0	2	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0010	2355	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0011	2355	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0012	2355	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0013	2355	1	0	0	1	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0014	2355	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0015	2355	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0016	2355	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0017	2355	1	0	0	0	0	1	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0018	2355	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0019	2355	1	1	0	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH5_chr16_66361691_66409784	0/0	c0020	2355	1	0	1	0	0	0	copy fasta	CDH5	chr16	66361691	66409784
CDH6_chr5_31188686_31334146	1/1	c0001	2373	143	47	19	51	7	17	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0002	2373	128	5	26	77	6	14	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0003	2373	13	11	2	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0004	2373	13	0	0	10	0	3	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0005	2373	9	7	1	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0006	2373	5	5	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0007	2373	4	0	0	4	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0008	2373	4	3	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0009	2373	3	0	0	2	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0010	2373	2	2	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0011	2373	2	0	1	0	1	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0012	2373	2	0	0	0	0	2	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0013	2373	2	0	0	2	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0014	2373	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146