JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH6_chr5_31188686_31334146	0/0	c0015	2373	1	1	0	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0016	2373	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0017	2373	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0018	2373	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0019	2373	1	0	0	0	0	1	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0020	2373	1	0	0	1	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH6_chr5_31188686_31334146	0/0	c0021	2373	1	0	1	0	0	0	copy fasta	CDH6	chr5	31188686	31334146
CDH7_chr18_65746012_65895337	0/1	c0001	2358	69	4	20	23	5	16	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	1/0	c0002	2358	30	15	5	1	1	7	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0003	2358	29	4	11	5	4	5	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0004	2358	21	19	1	1	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0005	2358	10	10	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0006	2358	8	4	2	0	2	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0007	2358	6	6	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0008	2358	6	6	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0009	2358	4	0	4	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0010	2358	4	3	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0011	2358	3	3	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0012	2358	3	0	1	0	2	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0013	2358	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0014	2358	2	1	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0015	2358	2	2	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0016	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0017	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0018	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0019	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0020	2358	1	0	1	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0021	2358	1	0	0	0	0	1	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0022	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0023	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH7_chr18_65746012_65895337	0/0	c0024	2358	1	1	0	0	0	0	copy fasta	CDH7	chr18	65746012	65895337
CDH8_chr16_61642250_62041438	1/1	c0001	2400	143	52	23	58	3	5	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0002	2400	17	7	5	3	1	1	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0003	2400	2	0	0	2	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0004	2400	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0005	2400	1	0	0	1	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0006	2400	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0007	2400	1	1	0	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0008	2400	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH8_chr16_61642250_62041438	0/0	c0009	2400	1	0	1	0	0	0	copy fasta	CDH8	chr16	61642250	62041438
CDH9_chr5_26875597_27043586	1/1	c0001	2370	115	22	31	41	5	14	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0002	2370	98	43	16	27	5	7	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0003	2370	14	13	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0004	2370	4	3	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0005	2370	2	0	0	0	0	2	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0006	2370	1	0	0	1	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0007	2370	1	1	0	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0008	2370	1	0	0	1	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0009	2370	1	0	0	0	0	1	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0010	2370	1	0	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586