JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDH9_chr5_26875597_27043586	0/0	c0011	2370	1	0	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDH9_chr5_26875597_27043586	0/0	c0012	2370	1	0	1	0	0	0	copy fasta	CDH9	chr5	26875597	27043586
CDHR1_chr10_84189537_84223694	1/1	c0001	2580	166	16	32	85	8	23	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0002	2580	138	52	25	43	4	14	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0003	2580	32	5	10	15	1	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0004	2580	8	0	0	8	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0005	2580	7	6	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0006	2580	5	5	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0007	2580	5	0	2	0	1	2	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0008	2580	4	1	1	1	1	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0009	2580	3	0	0	3	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0010	2580	2	0	1	0	1	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0011	2580	2	2	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0012	2580	2	0	0	2	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0013	2580	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0014	2580	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0015	2580	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0016	2580	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0017	2580	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0018	2580	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0019	2580	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0020	2580	1	0	1	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0021	2580	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0022	2580	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0023	2580	1	1	0	0	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0024	2580	1	0	0	0	0	1	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0025	2580	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR1_chr10_84189537_84223694	0/0	c0026	2580	1	0	0	1	0	0	copy fasta	CDHR1	chr10	84189537	84223694
CDHR2_chr5_176544342_176600824	0/0	c0001	3933	84	16	15	38	5	10	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0002	3933	72	1	12	43	3	13	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/1	c0003	3933	39	4	21	1	5	7	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0004	3933	31	4	3	18	1	5	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0005	3933	9	6	2	0	1	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0006	3933	8	2	1	5	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0007	3933	7	2	0	0	2	3	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0008	3933	5	5	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	1/0	c0009	3933	5	4	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0010	3933	5	5	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0011	3933	4	3	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0012	3933	4	0	2	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0013	3933	4	1	3	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0014	3933	3	3	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0015	3933	3	0	3	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0016	3933	3	3	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0017	3933	3	3	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0018	3933	3	0	3	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0019	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0020	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0021	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0022	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824