JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDHR2_chr5_176544342_176600824	0/0	c0023	3933	2	1	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0024	3933	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0025	3933	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0026	3933	2	0	1	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0027	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0028	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0029	3933	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0030	3933	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0031	3933	2	2	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0032	3933	2	0	0	0	0	2	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0033	3933	2	0	0	2	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0034	3933	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0035	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0036	3933	1	0	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0037	3933	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0038	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0039	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0040	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0041	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0042	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0043	3933	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0044	3933	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0045	3933	1	0	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0046	3933	1	0	0	1	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0047	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0048	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0049	3933	1	0	0	0	1	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0050	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0051	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0052	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0053	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0054	3933	1	1	0	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR2_chr5_176544342_176600824	0/0	c0055	3933	1	0	1	0	0	0	copy fasta	CDHR2	chr5	176544342	176600824
CDHR3_chr7_105958264_106041432	1/0	c0001	2658	78	19	18	26	5	9	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/1	c0002	2658	70	7	17	28	7	10	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0003	2658	39	19	1	17	0	2	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0004	2658	34	3	5	25	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0005	2658	27	1	10	13	0	3	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0006	2658	13	1	3	7	0	2	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0007	2658	11	2	0	8	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0008	2658	10	5	0	4	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0009	2658	9	3	2	2	0	2	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0010	2658	7	0	1	6	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0011	2658	7	6	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0012	2658	5	1	0	4	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0013	2658	5	3	1	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0014	2658	4	0	1	1	1	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0015	2658	4	0	0	0	0	4	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0016	2658	2	0	0	2	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0017	2658	2	0	1	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432