JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDHR3_chr7_105958264_106041432	0/0	c0018	2658	2	0	0	2	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0019	2658	2	0	0	2	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0020	2658	2	2	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0021	2658	2	2	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0022	2658	2	0	2	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0023	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0024	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0025	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0026	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0027	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0028	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0029	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0030	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0031	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0032	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0033	2658	1	0	0	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0034	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0035	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0036	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0037	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0038	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0039	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0040	2658	1	1	0	0	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0041	2658	1	0	0	1	0	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0042	2658	1	0	0	0	0	1	copy fasta	CDHR3	chr7	105958264	106041432
CDHR3_chr7_105958264_106041432	0/0	c0043	2658	1	0	0	0	1	0	copy fasta	CDHR3	chr7	105958264	106041432
CDHR4_chr3_49785732_49804873	1/0	c0001	2367	215	62	39	81	10	22	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/1	c0002	2367	97	29	15	37	0	15	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0003	2367	15	1	3	0	6	5	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0004	2367	8	0	7	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0005	2367	6	0	0	6	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0006	2367	3	0	0	3	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0007	2367	1	1	0	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0008	2367	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0009	2367	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0010	2367	1	0	1	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0011	2367	1	1	0	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0012	2367	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0013	2367	1	0	1	0	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0014	2380	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0015	2367	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR4_chr3_49785732_49804873	0/0	c0016	2367	1	0	0	1	0	0	copy fasta	CDHR4	chr3	49785732	49804873
CDHR5_chr11_611583_629955	0/0	c0001	2538	157	8	27	91	7	24	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0002	2538	74	10	11	44	2	7	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0003	2538	29	13	5	6	3	2	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/1	c0004	2538	24	5	15	0	2	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0005	2538	13	8	5	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0006	2538	11	1	3	2	1	4	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0007	2538	9	7	2	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0008	2544	6	6	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955