JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDHR5_chr11_611583_629955	0/0	c0009	2538	6	6	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0010	2538	5	5	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0011	2538	5	0	0	5	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0012	2538	5	0	0	5	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0013	2538	4	4	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0014	2538	4	0	1	1	0	2	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0015	2538	4	4	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0016	2538	3	0	1	0	0	2	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0017	2445	3	3	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0018	2538	3	3	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0019	2538	3	3	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0020	2538	2	0	1	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0021	2538	2	0	0	0	1	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0022	2538	2	1	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0023	2538	2	0	0	0	0	2	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0024	2538	2	0	2	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0025	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0026	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0027	2538	1	0	1	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0028	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0029	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0030	2538	1	0	1	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0031	2538	1	0	0	0	0	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0032	2538	1	0	1	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0033	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0034	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0035	2445	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0036	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0037	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0038	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0039	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0040	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0041	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0042	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0043	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0044	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0045	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0046	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0047	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0048	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0049	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0050	2538	1	0	0	0	0	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0051	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0052	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0053	2538	1	1	0	0	0	0	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0054	2538	1	0	0	0	0	1	copy fasta	CDHR5	chr11	611583	629955
CDHR5_chr11_611583_629955	0/0	c0055	2538	1	0	0	1	0	0	copy fasta	CDHR5	chr11	611583	629955
CDIN1_chr15_36574626_36815244	1/1	c0001	846	129	52	28	32	5	10	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	c0002	846	59	20	11	17	5	6	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	c0003	846	35	7	3	20	0	5	copy fasta	CDIN1	chr15	36574626	36815244