JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDIN1_chr15_36574626_36815244	0/0	c0004	846	14	3	2	6	0	3	copy fasta	CDIN1	chr15	36574626	36815244
CDIN1_chr15_36574626_36815244	0/0	c0005	846	1	0	0	1	0	0	copy fasta	CDIN1	chr15	36574626	36815244
CDIP1_chr16_4505669_4543773	0/1	c0001	627	315	90	52	128	10	34	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	c0002	627	7	7	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIP1_chr16_4505669_4543773	0/0	c0003	627	1	1	0	0	0	0	copy fasta	CDIP1	chr16	4505669	4543773
CDIPT_chr16_29853357_29868226	1/1	c0001	642	319	94	50	123	12	38	copy fasta	CDIPT	chr16	29853357	29868226
CDIPT_chr16_29853357_29868226	0/0	c0002	642	1	0	0	1	0	0	copy fasta	CDIPT	chr16	29853357	29868226
CDK10_chr16_89681689_89701354	1/1	c0001	1083	410	95	77	169	18	49	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	c0002	1083	6	0	0	6	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	c0003	1083	3	3	0	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	c0004	1083	1	0	1	0	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	c0005	1083	1	0	0	0	0	1	copy fasta	CDK10	chr16	89681689	89701354
CDK10_chr16_89681689_89701354	0/0	c0006	1083	1	0	0	1	0	0	copy fasta	CDK10	chr16	89681689	89701354
CDK11A_chr1_1697379_1729357	0/0	c0001	2343	167	4	33	115	5	10	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/1	c0002	2334	73	1	22	30	6	13	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0003	2343	59	24	6	23	0	6	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0004	2343	14	13	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0005	2337	5	4	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0006	2343	5	0	0	5	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0007	2343	4	4	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0008	2343	3	3	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0009	2334	3	3	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0010	2334	2	0	0	2	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0011	2343	2	0	0	1	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	1/0	c0012	2343	2	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0013	2355	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0014	2334	2	0	0	0	0	2	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0015	2343	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0016	2343	2	2	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0017	2343	2	0	0	0	2	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0018	2343	2	0	0	2	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0019	2337	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0020	2337	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0021	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0022	2343	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0023	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0024	2343	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0025	2343	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0026	2343	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0027	2334	1	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0028	2334	1	0	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0029	2334	1	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0030	2319	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0031	2343	1	1	0	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0032	2343	1	0	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0033	2343	1	0	0	0	1	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0034	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0035	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0036	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0037	2343	1	0	0	1	0	0	copy fasta	CDK11A	chr1	1697379	1729357