JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDK11A_chr1_1697379_1729357	0/0	c0038	2343	1	0	0	0	0	1	copy fasta	CDK11A	chr1	1697379	1729357
CDK11A_chr1_1697379_1729357	0/0	c0039	2343	1	0	1	0	0	0	copy fasta	CDK11A	chr1	1697379	1729357
CDK11B_chr1_1630225_1664004	0/1	c0001	2349	316	82	49	133	12	39	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	1/0	c0002	2349	58	2	17	29	4	5	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0003	2349	23	0	0	23	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0004	2349	9	9	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0005	2349	8	0	0	8	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0006	2349	4	4	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0007	2349	3	0	2	1	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0008	2349	3	0	0	3	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0009	2349	3	0	0	3	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0010	2349	2	0	0	2	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0011	2349	2	0	0	2	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0012	2349	2	0	2	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0013	2349	2	2	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0014	2349	2	0	0	2	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0015	2349	1	0	0	1	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0016	2349	1	0	0	0	0	1	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0017	2349	1	0	0	1	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0018	2349	1	0	0	0	0	1	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0019	2349	1	0	1	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0020	2349	1	0	0	1	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0021	2349	1	0	0	1	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0022	2349	1	1	0	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK11B_chr1_1630225_1664004	0/0	c0023	2349	1	0	1	0	0	0	copy fasta	CDK11B	chr1	1630225	1664004
CDK12_chr17_39456486_39539544	1/1	c0001	4473	234	56	56	85	14	21	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0002	4473	14	13	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0003	4473	3	3	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0004	4473	2	0	1	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0005	4473	2	1	1	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0006	4473	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0007	4473	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0008	4473	1	1	0	0	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0009	4473	1	0	0	1	0	0	copy fasta	CDK12	chr17	39456486	39539544
CDK12_chr17_39456486_39539544	0/0	c0010	4473	1	0	0	0	0	1	copy fasta	CDK12	chr17	39456486	39539544
CDK13_chr7_39945256_40104580	1/1	c0001	4539	217	70	53	53	13	26	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0002	4539	66	3	11	43	0	9	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0003	4539	10	9	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0004	4539	6	6	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0005	4539	4	0	0	4	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0006	4539	4	0	0	4	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0007	4545	3	0	0	3	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0008	4539	2	0	2	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0009	4539	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0010	4539	1	0	0	0	1	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0011	4539	1	1	0	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0012	4539	1	0	0	0	0	1	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0013	4539	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0014	4539	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0015	4539	1	0	0	1	0	0	copy fasta	CDK13	chr7	39945256	40104580