Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACTA1_chr1_229426245_229439094	0/0	c0006	1134	1	0	1	0	0	0	copy fasta	ACTA1	chr1	229426245	229439094
ACTA2_chr10_88930074_88957773	1/1	c0001	1134	401	94	64	187	16	38	copy fasta	ACTA2	chr10	88930074	88957773
ACTA2_chr10_88930074_88957773	0/0	c0002	1134	1	0	0	1	0	0	copy fasta	ACTA2	chr10	88930074	88957773
ACTBL2_chr5_57475018_57487811	1/1	c0001	1131	395	64	75	201	17	36	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0002	1131	14	6	3	2	1	2	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0003	1131	12	7	2	0	0	3	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0004	1131	9	9	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0005	1131	5	5	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0006	1131	3	3	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0007	1131	2	0	0	0	0	2	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0008	1131	2	2	0	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0009	1131	1	0	0	0	0	1	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0010	1131	1	0	1	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0011	1131	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0012	1131	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0013	1131	1	0	1	0	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTBL2_chr5_57475018_57487811	0/0	c0014	1131	1	0	0	1	0	0	copy fasta	ACTBL2	chr5	57475018	57487811
ACTB_chr7_5522148_5535601	1/1	c0001	1128	346	78	70	133	16	47	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0002	1128	12	3	6	2	0	1	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0003	1128	5	5	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0004	1128	2	2	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0005	1128	1	1	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0006	1128	1	1	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0007	1128	1	0	0	1	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0008	1128	1	1	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTB_chr7_5522148_5535601	0/0	c0009	1128	1	1	0	0	0	0	copy fasta	ACTB	chr7	5522148	5535601
ACTC1_chr15_34785230_34800549	1/1	c0001	1134	479	86	84	242	18	47	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	c0002	1134	14	14	0	0	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	c0003	1134	1	0	0	1	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	c0004	1134	1	0	0	0	0	1	copy fasta	ACTC1	chr15	34785230	34800549
ACTC1_chr15_34785230_34800549	0/0	c0005	1134	1	0	0	1	0	0	copy fasta	ACTC1	chr15	34785230	34800549
ACTG1_chr17_81504971_81517799	0/0	c0001	1128	211	45	37	93	8	28	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	1/0	c0002	1128	54	20	11	18	2	2	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/1	c0003	1128	46	11	20	0	6	8	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0004	1128	24	0	3	12	0	9	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0005	1128	8	1	0	6	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0006	1128	7	7	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0007	1128	4	4	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0008	1128	4	1	0	3	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0009	1128	2	0	0	2	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0010	1128	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0012	1128	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0013	1128	1	0	0	1	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0014	1128	1	0	0	0	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0015	1128	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0016	1128	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0017	1128	1	0	0	0	0	1	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0018	1128	1	1	0	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799
ACTG1_chr17_81504971_81517799	0/0	c0019	1128	1	0	1	0	0	0	copy fasta	ACTG1	chr17	81504971	81517799