JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDK13_chr7_39945256_40104580	0/0	c0016	4539	1	0	1	0	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0017	4539	1	0	0	1	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK13_chr7_39945256_40104580	0/0	c0018	4539	1	0	0	1	0	0	copy fasta	CDK13	chr7	39945256	40104580
CDK14_chr7_90591321_91215590	1/1	c0001	1410	161	51	40	33	4	31	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	c0002	1410	3	3	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	c0003	1410	2	2	0	0	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	c0004	1410	1	0	0	1	0	0	copy fasta	CDK14	chr7	90591321	91215590
CDK14_chr7_90591321_91215590	0/0	c0005	1410	1	0	0	0	0	1	copy fasta	CDK14	chr7	90591321	91215590
CDK15_chr2_201801537_201900550	1/1	c0001	1308	310	84	57	119	10	38	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0002	1308	3	0	3	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0003	1308	3	0	1	1	1	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0004	1308	1	0	0	0	1	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0005	1308	1	0	0	0	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0006	1308	1	0	0	0	0	1	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0007	1308	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0008	1308	1	1	0	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK15_chr2_201801537_201900550	0/0	c0009	1308	1	0	1	0	0	0	copy fasta	CDK15	chr2	201801537	201900550
CDK16_chrX_47213681_47234997	1/1	c0001	1491	279	60	50	130	9	28	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0002	1491	24	19	5	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0003	1491	5	0	0	5	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0004	1490	1	1	0	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0005	1487	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0006	1492	1	0	0	1	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK16_chrX_47213681_47234997	0/0	c0007	1491	1	0	1	0	0	0	copy fasta	CDK16	chrX	47213681	47234997
CDK17_chr12_96273261_96405439	1/1	c0001	1572	304	86	70	104	13	29	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	c0002	1572	39	0	3	20	5	11	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	c0003	1572	2	2	0	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK17_chr12_96273261_96405439	0/0	c0004	1572	1	0	1	0	0	0	copy fasta	CDK17	chr12	96273261	96405439
CDK18_chr1_205499669_205537790	1/1	c0001	1425	324	70	66	135	13	38	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0002	1425	43	17	10	9	2	5	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0003	1425	10	0	0	10	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0004	1425	4	4	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0005	1425	2	2	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0006	1425	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0007	1425	1	0	0	0	1	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0009	1425	1	0	0	0	0	1	copy fasta	CDK18	chr1	205499669	205537790
CDK18_chr1_205499669_205537790	0/0	c0010	1425	1	0	0	1	0	0	copy fasta	CDK18	chr1	205499669	205537790
CDK19_chr6_110604978_110820469	1/1	c0001	1509	300	76	46	140	4	32	copy fasta	CDK19	chr6	110604978	110820469
CDK1_chr10_60773478_60799852	1/1	c0001	894	454	90	81	215	18	48	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	c0002	894	1	1	0	0	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	c0003	894	1	0	1	0	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	c0004	894	1	0	0	1	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK1_chr10_60773478_60799852	0/0	c0005	894	1	1	0	0	0	0	copy fasta	CDK1	chr10	60773478	60799852
CDK20_chr9_87961441_87979533	1/0	c0001	1041	215	28	19	153	2	12	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/1	c0002	1041	208	58	48	59	12	30	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0003	1041	6	5	1	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0004	1041	2	2	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0005	1041	2	2	0	0	0	0	copy fasta	CDK20	chr9	87961441	87979533
CDK20_chr9_87961441_87979533	0/0	c0006	1041	2	0	2	0	0	0	copy fasta	CDK20	chr9	87961441	87979533