JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CDK5RAP2_chr9_120383875_120585167	0/0	c0004	5682	11	2	0	9	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0005	5682	7	5	2	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0006	5682	7	6	1	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0007	5682	6	0	0	6	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0008	5682	4	4	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0009	5682	4	0	2	0	1	1	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0010	5682	3	1	2	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0011	5682	3	3	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0012	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0013	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0014	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0015	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0016	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0017	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0018	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0019	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0020	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/1	c0021	5682	1	0	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0022	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0023	5682	1	0	1	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0024	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0025	5682	1	0	0	0	0	1	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0026	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0027	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0028	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0029	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0030	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0031	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0032	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	1/0	c0033	5682	1	0	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0034	5682	1	1	0	0	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0035	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0036	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP2_chr9_120383875_120585167	0/0	c0037	5682	1	0	0	1	0	0	copy fasta	CDK5RAP2	chr9	120383875	120585167
CDK5RAP3_chr17_47966113_47986781	1/0	c0001	1521	356	71	72	157	13	42	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0002	1521	9	9	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0003	1521	5	1	1	1	1	1	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0004	1521	4	0	0	4	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/1	c0005	1521	2	1	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0006	1521	2	2	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0007	1521	2	2	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0008	1521	2	0	2	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0009	1521	2	0	1	0	1	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0010	1521	2	2	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0011	1521	1	0	0	1	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0012	1521	1	1	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0013	1521	1	0	0	0	1	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0014	1521	1	1	0	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0015	1521	1	0	0	0	0	1	copy fasta	CDK5RAP3	chr17	47966113	47986781
CDK5RAP3_chr17_47966113_47986781	0/0	c0016	1521	1	0	1	0	0	0	copy fasta	CDK5RAP3	chr17	47966113	47986781